bcftools/bcftools_sort
Sort
VCF
BCF
Description
Sorts VCF/BCF files.
Inputs
Name | Type & Properties | Description |
|---|---|---|
--input -i | file required | Input VCF/BCF file. |
Outputs
Name | Type & Properties | Description |
|---|---|---|
--output -o | file required output | Output sorted VCF/BCF file. |
Options
Name | Type & Properties | Description |
|---|---|---|
--output_type -O | string | Compresses or uncompresses the output. The options are: b: compressed BCF, u: uncompressed BCF, z: compressed VCF, v: uncompressed VCF. |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
output: "$id.$key.output"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/biobox.git \
-revision v0.2.0 \
-main-script target/nextflow/bcftools/bcftools_sort/main.nf \
-params-file params.yaml Relationships
Used by
0 relationships
No components use this component.
Current component
bcftools/bcftools_sortbiobox v0.2.0
Uses
0 relationships
No component dependencies found.