bedtools/bedtools_bed12tobed6
Converts
BED12
BED6
Description
Converts BED features in BED12 (a.k.a. “blocked” BED features such as genes) to discrete BED6 features.
For example, in the case of a gene with six exons, bed12ToBed6 would create six separate BED6 features (i.e., one for each exon).
Inputs
Name | Type & Properties | Description |
|---|---|---|
--input -i | file required | Input BED12 file. |
Outputs
Name | Type & Properties | Description |
|---|---|---|
--output -o | file output | Output BED6 file to be written. |
Options
Name | Type & Properties | Description |
|---|---|---|
--n_score -n | boolean_true | Force the score to be the (1-based) block number from the BED12. |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
output: "$id.$key.output"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/biobox.git \
-revision v0.2.0 \
-main-script target/nextflow/bedtools/bedtools_bed12tobed6/main.nf \
-params-file params.yaml Relationships
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Current component
bedtools/bedtools_bed12tobed6biobox v0.2.0
Uses
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