busco/busco_download_datasets
lineage datasets
Description
Downloads available busco datasets
Inputs
Name | Type & Properties | Description |
|---|---|---|
--download | string required | Download dataset. Possible values are a specific dataset name, "all", "prokaryota", "eukaryota", or "virus". The full list of available datasets can be viewed [here](https://busco-data.ezlab.org/v5/data/lineages/) or by running the busco/busco_list_datasets component. |
Outputs
Name | Type & Properties | Description |
|---|---|---|
--download_path | file output | Local filepath for storing BUSCO dataset downloads |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
download_path: "$id.$key.download_path.busco_downloads"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/biobox.git \
-revision v0.3.0 \
-main-script target/nextflow/busco/busco_download_datasets/main.nf \
-params-file params.yaml Relationships
Used by
0 relationships
No components use this component.
Current component
busco/busco_download_datasetsbiobox v0.3.0
Uses
0 relationships
No component dependencies found.