seqtk/seqtk_sample
sample
FASTA
FASTQ
Description
Subsamples sequences from FASTA/Q files.
Inputs
Name | Type & Properties | Description |
|---|---|---|
--input | file required | The input FASTA/Q file. |
Outputs
Name | Type & Properties | Description |
|---|---|---|
--output | file required output | The output FASTA/Q file. |
Options
Name | Type & Properties | Description |
|---|---|---|
--seed | integer | Seed for random generator. |
--fraction_number | double required | Fraction or number of sequences to sample. |
--two_pass_mode | boolean_true | Twice as slow but with much reduced memory |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
output: "$id.$key.output"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/biobox.git \
-revision v0.3.0 \
-main-script target/nextflow/seqtk/seqtk_sample/main.nf \
-params-file params.yaml Relationships
Used by
0 relationships
No components use this component.
Current component
seqtk/seqtk_samplebiobox v0.3.0
Uses
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