fq/fq_filter
fastq
filter
sequence
Description
Filters a FASTQ file based on record names or sequence patterns.
Input
Name | Type & Properties | Description |
|---|---|---|
--input | file required | FASTQ source file. Accepts both raw and gzipped FASTQ inputs. |
Output
Name | Type & Properties | Description |
|---|---|---|
--output | file required output | Filtered FASTQ destination file. Output will be gzipped if ends in `.gz`. |
Options
Name | Type & Properties | Description |
|---|---|---|
--names | file | File containing allowlist of record names (one per line). |
--sequence_pattern | string | Keep records that have sequences that match the given regular expression. |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
output: "$id.$key.output"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/biobox.git \
-revision v0.4.0 \
-main-script target/nextflow/fq/fq_filter/main.nf \
-params-file params.yaml Relationships
Used by
0 relationships
No components use this component.
Current component
fq/fq_filterbiobox v0.4.0
Uses
0 relationships
No component dependencies found.