fq/fq_generate
FASTQ
generate
simulate
test-data
Description
Generate a random FASTQ file pair for testing and simulation purposes.
Output
Name | Type & Properties | Description |
|---|---|---|
--r1_dst | file required output | Read 1 destination. Output will be gzipped if ends in `.gz`. |
--r2_dst | file required output | Read 2 destination. Output will be gzipped if ends in `.gz`. |
Options
Name | Type & Properties | Description |
|---|---|---|
--seed -s | integer | Seed to use for the random number generator. |
--record_count -n | integer | Number of records to generate. |
--read_length | integer | Number of bases in the sequence. |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
r1_dst: "$id.$key.r1_dst.gz"
r2_dst: "$id.$key.r2_dst.gz"
record_count: [ 10000 ]
read_length: [ 101 ]
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/biobox.git \
-revision v0.4.2 \
-main-script target/nextflow/fq/fq_generate/main.nf \
-params-file params.yaml Relationships
Used by
0 relationships
No components use this component.
Current component
fq/fq_generatebiobox v0.4.2
Uses
0 relationships
No component dependencies found.