rseqc/rseqc_bamstat
rnaseq
genomics
Description
Generate statistics from a bam file.
Input
Name | Type & Properties | Description |
|---|---|---|
--input_file -i | file required | Input alignment file in BAM or SAM format. |
--mapq -q | integer | Minimum mapping quality (phred scaled) to determine uniquely mapped reads. Default: '30'. |
Output
Name | Type & Properties | Description |
|---|---|---|
--output | file output | Output file (txt) with mapping quality statistics. |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
output: "$id.$key.output"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/biobox.git \
-revision v0.4.2 \
-main-script target/nextflow/rseqc/rseqc_bamstat/main.nf \
-params-file params.yaml Relationships
Used by
0 relationships
No components use this component.
Current component
rseqc/rseqc_bamstatbiobox v0.4.2
Uses
0 relationships
No component dependencies found.