minimap2/minimap2_index
Alignment
Indexing
Minimap2
Description
Provides fasta index required by minimap2 alignment.
Create a minimap2 index (.mmi) from a FASTA reference.
This component uses minimap2's -d flag to create an index file (.mmi).
Inputs
Name | Type & Properties | Description |
|---|---|---|
--input -i | file required | Reference database file in FASTA format. |
Outputs
Name | Type & Properties | Description |
|---|---|---|
--output -o | file required output | Output Minimap2 index in .mmi format. |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
output: "$id.$key.output.mmi"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/biobox.git \
-revision v0.5.0 \
-main-script target/nextflow/minimap2/minimap2_index/main.nf \
-params-file params.yaml Relationships
Used by
0 relationships
No components use this component.
Current component
minimap2/minimap2_indexbiobox v0.5.0
Uses
0 relationships
No component dependencies found.