snpeff/snpeff_download
annotation
database
download
snp
variant
snpeff
Description
Download a pre-built SnpEff reference genome/annotation database.
Inputs
Name | Type & Properties | Description |
|---|---|---|
--genome_version | string required | Reference genome/database version to download. |
Outputs
Name | Type & Properties | Description |
|---|---|---|
--output | file required output | Directory in which the downloaded database is stored |
Generic options
Name | Type & Properties | Description |
|---|---|---|
--config -c | file | Specify config file. |
--config_option | string | Override a config file option (name=value). |
--debug -d | boolean_true | Debug mode (very verbose). |
--no_log | boolean_true | Do not report usage statistics to server. |
--quiet -q | boolean_true | Quiet mode (do not show any messages or errors). |
--verbose -v | boolean_true | Verbose mode. |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
output: "$id.$key.output.data_dir"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/biobox.git \
-revision v0.5.0 \
-main-script target/nextflow/snpeff/snpeff_download/main.nf \
-params-file params.yaml Relationships
Used by
0 relationships
No components use this component.
Current component
snpeff/snpeff_downloadbiobox v0.5.0
Uses
0 relationships
No component dependencies found.