dataflow/gather_fastqs_and_validate
Description
From a directory containing fastq files, gather the files per sample
and validate according to the contents of the sample sheet.
Input arguments
Name | Type & Properties | Description |
|---|---|---|
--input | file required | Directory containing .fastq files |
--sample_sheet | file required | Sample sheet |
Output arguments
Name | Type & Properties | Description |
|---|---|---|
--fastq_forward | file required multiple output | |
--fastq_reverse | file multiple output |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
fastq_forward: "$id.$key.fastq_forward._*"
fastq_reverse: "$id.$key.fastq_reverse._*"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/demultiplex.git \
-revision v0.3.4 \
-main-script target/nextflow/dataflow/gather_fastqs_and_validate/main.nf \
-params-file params.yaml Relationships
Used by
1 relationships
Current component
dataflow/gather_fastqs_and_validatedemultiplex v0.3.4
Uses
0 relationships
No component dependencies found.