dataflow/combine_samples
Description
Combine fastq files from across samples into one event with a list of fastq files per orientation.
Input arguments
Name | Type & Properties | Description |
|---|---|---|
--id | string required | ID of the new event |
--forward_input | file required multiple | |
--reverse_input | file multiple | |
--sample_qc_dir | file required |
Output arguments
Name | Type & Properties | Description |
|---|---|---|
--output_forward | file required multiple output | |
--output_reverse | file multiple output | |
--output_sample_qc | file required multiple output |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
id: "run"
output_forward: "$id.$key.output_forward._*"
output_reverse: "$id.$key.output_reverse._*"
output_sample_qc: "$id.$key.output_sample_qc._*"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/demultiplex.git \
-revision v0.4.4 \
-main-script target/nextflow/dataflow/combine_samples/main.nf \
-params-file params.yaml Relationships
Used by
1 relationships
Current component
dataflow/combine_samplesdemultiplex v0.4.4
Uses
0 relationships
No component dependencies found.