stats/combine_star_logs
Description
No description provided.
Arguments
Name | Type & Properties | Description |
|---|---|---|
--barcodes | string required multiple | Barcodes responding to the respective log files. |
--star_logs | file required multiple | Paths to the STAR log files (most frequently called Log.final.out) |
--gene_summary_logs | file required multiple | Paths to the Summary.csv files from the STAR Solo output. Can be found in the 'Solo.out/Gene' folder relative to the root of the STAR output directory. |
--reads_per_gene_logs | file required multiple | Paths to the 'ReadsPerGene.out.tab' files as output by STAR. |
--output | file output | Tab-delimited file describing for each barcode (as the rows), the metrics (as columns) gathered from the different input files. |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
output: "$id.$key.output"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/htrnaseq.git \
-revision v0.14.7 \
-main-script target/nextflow/stats/combine_star_logs/main.nf \
-params-file params.yaml Relationships
Used by
1 relationships
Current component
stats/combine_star_logshtrnaseq v0.14.7
Uses
0 relationships
No component dependencies found.