utils/concatRuns
Description
Concatenate well FASTQ files from different runs in order to increase sequencing depth.
Arguments
Name | Type & Properties | Description |
|---|---|---|
--input_r1 | file required multiple | |
--input_r2 | file required multiple | |
--sample_id | string required | |
--output_r1 | file multiple output | Path to read 1 fastq/fasta file |
--output_r2 | file multiple output | Path to read 2 fastq/fasta file |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
output_r1: "$id.$key.output_r1._*"
output_r2: "$id.$key.output_r2._*"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/htrnaseq.git \
-revision v0.14.7 \
-main-script target/nextflow/utils/concatRuns/main.nf \
-params-file params.yaml Relationships
Used by
1 relationships
Current component
utils/concatRunshtrnaseq v0.14.7
Uses
1 relationships