eset/create_fdata
Description
Create a fdata file
Arguments
Name | Type & Properties | Description |
|---|---|---|
--gtf | file required | Genome annotation file in GTF format. |
--output | file output | Tab-delimited text file containing information about the 'gene' or 'transcript' entries from the input GTF file. The 'transcript' entries are used in case the source of the GTF was 'refGene' or 'ncbiRefSeq'. |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
output: "$id.$key.output"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/htrnaseq.git \
-revision v0.15.0-rc.2 \
-main-script target/nextflow/eset/create_fdata/main.nf \
-params-file params.yaml Relationships
Used by
1 relationships
Current component
eset/create_fdatahtrnaseq v0.15.0-rc.2
Uses
0 relationships
No component dependencies found.