Viash Hub

Description

This component test the cutadapt output from the well_demultiplex subworkflow.

Inputs

Name	Type & Properties	Description
--fastq_r1	file required multiple	Path to the forward reads to test.
--fastq_r2	file required multiple	Path to the reverse reads to test.
--ids	string required multiple	Well IDs for the corresponding fastq input

Name

Type & Properties

--fastq_r1

file

required

multiple

--fastq_r2

file

required

multiple

--ids

string

required

multiple

Run this component

Run the following command to execute this component with Nextflow:

cat > params.yaml <<'EOM'  
id: "run"  
publish_dir: "output/"  
EOM

nextflow run https://packages.viash-hub.com/vsh/htrnaseq.git \  
  -revision v0.15.0-rc.2 \  
  -main-script target/nextflow/integration_test_components/well_demultiplexing/check_cutadapt_output/main.nf \  
  -params-file params.yaml

Relationships

Used by

0 relationships

No components use this component.

Current component

integration_test_components/well_demultiplexing/check_cutadapt_outputhtrnaseq v0.15.0-rc.2

Uses

0 relationships

No component dependencies found.