stats/generate_pool_statistics
Description
No description provided.
Arguments
Name | Type & Properties | Description |
|---|---|---|
--nrReadsNrGenesPerChrom | file multiple | Path to an output file that contains a .tsv formatted table describing per chromosome the number of reads that were mapped to that chromosome (NumberOfReads column) and the number of genes on that chromosome that had at least one read mapped to it (NumberOfGenes). |
--nrReadsNrGenesPerChromPool | file output | Pivot table in tsv format of the combined input nrReadsNrGenesPerChrom files. Describes per chromosome (as columns) the number of reads, as well as the total number of reads per cell barcode and the percentage of nuclear, ERCC and mitochondrial reads. |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
nrReadsNrGenesPerChrom: [ "processedBamFile_well1.tsv", "processedBamfile_well2.tsv" ]
nrReadsNrGenesPerChromPool: "$id.$key.nrReadsNrGenesPerChromPool.txt"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/htrnaseq.git \
-revision v0.15.0-rc.2 \
-main-script target/nextflow/stats/generate_pool_statistics/main.nf \
-params-file params.yaml Relationships
Used by
1 relationships
Current component
stats/generate_pool_statisticshtrnaseq v0.15.0-rc.2
Uses
0 relationships
No component dependencies found.