Viash Hub

Description

Converts a h5mu file into a h5ad file.

Arguments

Name	Type & Properties	Description
--input -i	file required	Input MuData file
--modality	string
--output -o	file output	Output AnnData file.
--output_compression	string	The compression format to be used on the final h5ad object.

Name

Type & Properties

--input

-i

file

required

--modality

string

--output

-o

file

output

--output_compression

string

Run this component

Run the following command to execute this component with Nextflow:

cat > params.yaml <<'EOM'  
input: [ "input.h5mu" ]  
modality: [ "rna" ]  
output: "$id.$key.output"  
output_compression: [ "gzip" ]  
id: "run"  
publish_dir: "output/"  
EOM

nextflow run https://packages.viash-hub.com/vsh/openpipeline.git \  
  -revision 1.0.3 \  
  -main-script target/nextflow/convert/from_h5mu_to_h5ad/main.nf \  
  -params-file params.yaml

Relationships

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No components use this component.

Current component

convert/from_h5mu_to_h5adopenpipeline 1.0.3

Uses

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