genetic_demux/samtools
Description
Filter the BAM according to the instruction of scSplit via Samtools.
Arguments
Name | Type & Properties | Description |
|---|---|---|
--bam | file required | Input bam file for filtering. |
--output | file output | Samtools output directory. |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
output: "$id.$key.output.samtools_out"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/openpipeline.git \
-revision 1.0.3 \
-main-script target/nextflow/genetic_demux/samtools/main.nf \
-params-file params.yaml Relationships
Used by
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No components use this component.
Current component
genetic_demux/samtoolsopenpipeline 1.0.3
Uses
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