Viash Hub

Description

Move a data matrix stored at the .layers or .X attributes in a MuData object to another layer.

Arguments

Name	Type & Properties	Description
--input -i	file required	Input h5mu file
--modality	string
--input_layer	string
--output -o	file required output	Output h5mu file.
--output_layer	string
--output_compression	string	The compression format to be used on the output h5mu object.

Name

Type & Properties

--input

-i

file

required

--modality

string

--input_layer

string

--output

-o

file

required

output

--output_layer

string

--output_compression

string

Run this component

Run the following command to execute this component with Nextflow:

cat > params.yaml <<'EOM'  
modality: [ "rna" ]  
output: "$id.$key.output.h5mu"  
id: "run"  
publish_dir: "output/"  
EOM

nextflow run https://packages.viash-hub.com/vsh/openpipeline.git \  
  -revision 1.0.4 \  
  -main-script target/nextflow/transform/move_layer/main.nf \  
  -params-file params.yaml

Relationships

Used by

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Current component

transform/move_layeropenpipeline 1.0.4

Uses

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