mapping/htseq_count_to_h5mu
Description
Convert the htseq table to a h5mu.
Input
Name | Type & Properties | Description |
|---|---|---|
--input_id | string required multiple | The obs index for the counts |
--input_counts | file required multiple | The counts as a TSV file as output by HTSeq. |
--reference | file required | The GTF file. |
Outputs
Name | Type & Properties | Description |
|---|---|---|
--output -o | file required output | Output h5mu file. |
--output_compression | string | The compression format to be used on the output h5mu object. |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
output: "$id.$key.output.h5mu"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/openpipeline.git \
-revision 2.1.2 \
-main-script target/nextflow/mapping/htseq_count_to_h5mu/main.nf \
-params-file params.yaml Relationships
Used by
0 relationships
No components use this component.
Current component
mapping/htseq_count_to_h5muopenpipeline 2.1.2
Uses
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No component dependencies found.