metadata/join_uns_to_obs
Description
Join a data frame of length 1 (1 row index value) in .uns containing metadata to the .obs of a mudata file.
Arguments
Name | Type & Properties | Description |
|---|---|---|
--input -i | file required | Input h5mu file |
--modality | string | |
--uns_key | string required | |
--output -o | file required output | Output h5mu file. |
--output_compression | string | The compression format to be used on the output h5mu object. |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
modality: [ "rna" ]
output: "$id.$key.output.h5mu"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/openpipeline.git \
-revision 2.1.2 \
-main-script target/nextflow/metadata/join_uns_to_obs/main.nf \
-params-file params.yaml Relationships
Used by
0 relationships
No components use this component.
Current component
metadata/join_uns_to_obsopenpipeline 2.1.2
Uses
0 relationships
No component dependencies found.