reference/cellranger_mkgtf
Description
Make a GTF file - filter by a specific attribute.
Arguments
Name | Type & Properties | Description |
|---|---|---|
--input_gtf | file required | Reference GTF annotation. |
--output_gtf | file required output | Output GTF file. |
--attribute | string required multiple | Key-value pair in attributes field to be kept in the GTF file of the format attribute:attribute_value. |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
output_gtf: "$id.$key.output_gtf.gz"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/openpipeline.git \
-revision v3.0.0 \
-main-script target/nextflow/reference/cellranger_mkgtf/main.nf \
-params-file params.yaml Relationships
Used by
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Current component
reference/cellranger_mkgtfopenpipeline v3.0.0
Uses
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No component dependencies found.