process_10xh5/filter_10xh5
Description
Filter a 10x h5 dataset.
Arguments
Name | Type & Properties | Description |
|---|---|---|
--input | file required | An h5 file from the 10x genomics website. |
--output | file required output | Output h5 file. |
--min_library_size | integer | Minimum library size. |
--min_cells_per_gene | integer | Minimum number of cells per gene. |
--keep_feature_types | string multiple | Specify which feature types will never be filtered out |
--verbose | boolean_true | Increase verbosity |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
output: "$id.$key.output.h5"
min_library_size: [ 0 ]
min_cells_per_gene: [ 0 ]
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/openpipeline.git \
-revision v3.0.1 \
-main-script target/nextflow/process_10xh5/filter_10xh5/main.nf \
-params-file params.yaml Relationships
Used by
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Current component
process_10xh5/filter_10xh5openpipeline v3.0.1
Uses
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