test_workflows/annotation/scgpt_annotation_test
Description
This component test the output of the the scgpt_annotation workflow.
Inputs
Name | Type & Properties | Description |
|---|---|---|
--input | file required | Path to h5mu output. |
--n_hvg | integer required | Number of highly variable genes the input file was subset for. |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/openpipeline.git \
-revision v3.0.2 \
-main-script target/nextflow/test_workflows/annotation/scgpt_annotation_test/main.nf \
-params-file params.yaml Relationships
Used by
0 relationships
No components use this component.
Current component
test_workflows/annotation/scgpt_annotation_testopenpipeline v3.0.2
Uses
0 relationships
No component dependencies found.