Viash Hub

Description

Create an intersection between two or more modalities.

This component removes any observations which are not present in all modalities.

Arguments

Name	Type & Properties	Description
--input	file required	Input h5mu file
--modalities	string required multiple	Which modalities from the input MuData file to process.
--output	file output	Output h5mu file.
--output_compression	string	Compression format to use for the output AnnData and/or Mudata objects. By default no compression is applied.

Name

Type & Properties

--input

file

required

--modalities

string

required

multiple

--output

file

output

--output_compression

string

Run this component

Run the following command to execute this component with Nextflow:

cat > params.yaml <<'EOM'  
output: "$id.$key.output.h5mu"  
id: "run"  
publish_dir: "output/"  
EOM

nextflow run https://packages.viash-hub.com/vsh/openpipeline.git \  
  -revision v4.0.1 \  
  -main-script target/nextflow/filter/intersect_obs/main.nf \  
  -params-file params.yaml

Relationships

Used by

0 relationships

No components use this component.

Current component

filter/intersect_obsopenpipeline v4.0.1

Uses

0 relationships

No component dependencies found.