convert/from_h5ad_to_seurat
Description
Converts an h5ad file into a Seurat file.
Arguments
Name | Type & Properties | Description |
|---|---|---|
--input -i | file required | Input h5ad file |
--assay | string | Name of the assay to be created. |
--output -o | file required output | Output Seurat file |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
assay: [ "RNA" ]
output: "$id.$key.output.rds"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/openpipeline.git \
-revision v4.0.3 \
-main-script target/nextflow/convert/from_h5ad_to_seurat/main.nf \
-params-file params.yaml Relationships
Used by
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No components use this component.
Current component
convert/from_h5ad_to_seuratopenpipeline v4.0.3
Uses
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