demultiplex

Description

Demultiplexing of raw sequencing data

Type

nextflow_script

License

MIT

Links

Repository

Launch

Run this component

Run the following command to execute this component with Nextflow:

cat > params.yaml <<'EOM'  
output: "$id.$key.output"  
output_falco: "$id.$key.output_falco"  
output_multiqc: "$id.$key.output_multiqc"  
id: "run"  
publish_dir: "output/"  
EOM

nextflow run https://packages.viash-hub.com/vsh/demultiplex.git \  
  -revision v0.1.0 \  
  -main-script target/nextflow/demultiplex/main.nf \  
  -params-file params.yaml

Input arguments

Name	Type & Properties	Description
--input	file required	Directory containing raw sequencing data
--sample_sheet	file	Sample sheet as input for BCL Convert. If not specified, will try to autodetect the sample sheet in the input directory

Name

Type & Properties

--input

file

required

--sample_sheet

file

Output arguments

Name	Type & Properties	Description
--output	file required output	Directory to write fastq data to
--output_falco	file output	Directory to write falco output to
--output_multiqc	file output	Directory to write falco output to

Name

Type & Properties

--output

file

required

output

--output_falco

file

output

--output_multiqc

file

output