convert/from_bd_to_10x_molecular_barcode_tags
Description
Convert the molecular barcode sequence SAM tag from BD format (MA) to 10X format (UB).
Arguments
Name | Type & Properties | Description |
|---|---|---|
--input -i | file required | Input SAM or BAM file. |
--output -o | file output | Output alignment file. |
--bam | boolean_true | Output a BAM file. |
--threads -t | integer | Number of threads |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
output: "$id.$key.output.sam"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/openpipeline.git \
-revision 2.0.0 \
-main-script target/nextflow/convert/from_bd_to_10x_molecular_barcode_tags/main.nf \
-params-file params.yaml Relationships
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Current component
convert/from_bd_to_10x_molecular_barcode_tagsopenpipeline 2.0.0
Uses
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