Description
Convert the molecular barcode sequence SAM tag from BD format (MA) to 10X format (UB).
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
output: "$id.$key.output.sam"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/openpipeline.git \
-revision v3.0.1 \
-main-script target/nextflow/convert/from_bd_to_10x_molecular_barcode_tags/main.nf \
-params-file params.yaml Name | Type & Properties |
|---|---|
--input -i | file required |
--output -o | file output |
--bam | boolean_true |
--threads -t | integer |