Collections
Explore comprehensive guides and overviews of our bioinformatics workflows and modules.
Bioinformatics Toolbox
A suite of reusable bioinformatics modules for common tasks such as QC, alignment and plotting.
Replace scattered scripts with well-tested components and compose larger workflows with ease.
Stable
Bulk RNA-seq Pipeline
A turnkey workflow for processing bulk RNA sequencing data from raw reads to quantified gene expression with full reproducibility.
Experimental
High-Throughput RNA-seq
A scalable workflow for demultiplexing and processing large batches of RNA-seq data from multi-lane flow cells.
Stable
Single-Cell Multi-omics
A unified pipeline for single-cell transcriptomics, epigenomics and multi-modal analysis, covering everything from raw reads to downstream interpretation.
Stable
Spatial Omics
Workflows for spatial transcriptomics and multi-modal spatial analysis.
Process and analyze data from Xenium, CosMx, Visium and other spatial platforms.
Stable