concat_text
Description
Concatenate a number of text files, handle gzipped text files gracefully and
optionally gzip the output text file.
This component is useful for concatening fastq files from different lanes, for instance.
Input arguments
Name | Type & Properties | Description |
|---|---|---|
--input | file required multiple | A list of (gzipped) text files. |
Output arguments
Name | Type & Properties | Description |
|---|---|---|
--gzip_output | boolean_true | Should the output be zipped? |
--output | file output | File to write the output to, optionally gzipped. |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
output: "$id.$key.output.txt"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/craftbox.git \
-revision v0.2.0 \
-main-script target/nextflow/concat_text/main.nf \
-params-file params.yaml Relationships
Used by
9 relationships, 2 components
Current component
concat_textcraftbox v0.2.0
Uses
0 relationships
No component dependencies found.