io/publish
Description
Publish the processed results of the run
Input arguments
Name | Type & Properties | Description |
|---|---|---|
--input | file required | Directory to write fastq data to |
--input_sample_qc | file required multiple | Directory to write sample QC output to |
--input_multiqc | file required | Location where to write the MultiQC report to. |
--input_run_information | file required | Location where to write the run information to. |
--input_demultiplexer_logs | file required |
Output arguments
Name | Type & Properties | Description |
|---|---|---|
--output | file output | |
--output_sample_qc | file output | |
--output_multiqc | file output | |
--output_run_information | file output | |
--output_demultiplexer_logs | file output |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
output: "$id.$key.output"
output_sample_qc: "$id.$key.output_sample_qc"
output_multiqc: "$id.$key.output_multiqc"
output_run_information: "$id.$key.output_run_information"
output_demultiplexer_logs: "$id.$key.output_demultiplexer_logs"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/demultiplex.git \
-revision v0.4.2 \
-main-script target/nextflow/io/publish/main.nf \
-params-file params.yaml Relationships
Used by
1 relationships
Current component
io/publishdemultiplex v0.4.2
Uses
0 relationships
No component dependencies found.