workflows/utils/groupWells
Description
N/A
Inputs
Name | Type & Properties | Description |
|---|---|---|
--well | string required | Barcode identifier for a well |
--pool | string required | Identifier of the pool |
--input_r1 | file required | Path to the input for R1 |
--input_r2 | file required | Path to the input for R1 |
Output
Name | Type & Properties | Description |
|---|---|---|
--wells | string multiple output | List of grouped wells (by means of barcodes) |
--output_r1 | file multiple output | Path to output for R2 |
--output_r2 | file multiple output | Path to the output for R2 |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
wells: "$id.$key.wells._*.gz"
output_r1: "$id.$key.output_r1._*"
output_r2: "$id.$key.output_r2._*"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/htrnaseq.git \
-revision v0.1.0 \
-main-script target/nextflow/workflows/utils/groupWells/main.nf \
-params-file params.yaml Relationships
Used by
2 relationships
Current component
workflows/utils/groupWellshtrnaseq v0.1.0
Uses
0 relationships
No component dependencies found.