io/publish_results
Description
Publish the results
Input arguments
Name | Type & Properties | Description |
|---|---|---|
--star_output | file required multiple | Output from mapping with STAR |
--nrReadsNrGenesPerChrom | file required multiple | |
--star_qc_metrics | file required multiple | |
--eset | file required multiple | |
--f_data | file required multiple | |
--p_data | file required multiple | |
--html_report | file required | |
--run_params | file required | |
--run_metadata | file required |
Output directory
Name | Type & Properties | Description |
|---|---|---|
--star_output_dir | file output | |
--nrReadsNrGenesPerChrom_dir | file output | |
--star_qc_metrics_dir | file output | |
--eset_dir | file output | |
--f_data_dir | file output | |
--p_data_dir | file output |
Output file arguments
Name | Type & Properties | Description |
|---|---|---|
--run_params_output | file output | |
--run_metadata_output | file output | |
--html_report_output | file output |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
star_output_dir: "$id.$key.star_output_dir"
nrReadsNrGenesPerChrom_dir: "$id.$key.nrReadsNrGenesPerChrom_dir"
star_qc_metrics_dir: "$id.$key.star_qc_metrics_dir"
eset_dir: "$id.$key.eset_dir"
f_data_dir: "$id.$key.f_data_dir"
p_data_dir: "$id.$key.p_data_dir"
run_params_output: "$id.$key.run_params_output"
run_metadata_output: "$id.$key.run_metadata_output"
html_report_output: "$id.$key.html_report_output"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/htrnaseq.git \
-revision v0.14.7 \
-main-script target/nextflow/io/publish_results/main.nf \
-params-file params.yaml Relationships
Used by
1 relationships
Current component
io/publish_resultshtrnaseq v0.14.7
Uses
0 relationships
No component dependencies found.