demux/cellranger_mkfastq
Description
Demultiplex raw sequencing data
Arguments
Name | Type & Properties | Description |
|---|---|---|
--input | file required | Path to the (untarred) BCL files. Expects 'RunParameters.xml' at './'. |
--sample_sheet | file required | The path to the sample sheet. |
--output | file required output | The folder to store the demux results |
--reports | file output | Reports directory |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
output: "$id.$key.output./path/to/output"
reports: "$id.$key.reports.reports_dir"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/openpipeline.git \
-revision v4.2.0 \
-main-script target/nextflow/demux/cellranger_mkfastq/main.nf \
-params-file params.yaml Relationships
Used by
1 relationships
Current component
demux/cellranger_mkfastqopenpipeline v4.2.0
Uses
0 relationships
No component dependencies found.