Description
Demultiplex raw sequencing data
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
output: "$id.$key.output./path/to/output"
reports: "$id.$key.reports.reports_dir"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/openpipeline.git \
-revision v4.2.0 \
-main-script target/nextflow/demux/cellranger_mkfastq/main.nf \
-params-file params.yaml Name | Type & Properties |
|---|---|
--input | file required |
--sample_sheet | file required |
--output | file required output |
--reports | file output |