convert/from_tiledb_to_h5mu
Description
No description provided.
Input database
Name | Type & Properties | Description |
|---|---|---|
--input_uri | string required | A URI pointing to a TileDB-SOMA database. |
--s3_region | string | Region where the TileDB-SOMA database is hosted. |
--endpoint | string | Custom endpoint to use to connect to S3 |
--s3_no_sign_request | boolean | Do not sign S3 requests. Credentials will not be loaded if this argument is provided. |
--input_modality | string required | TileDB-SOMA measurement to take the input from. |
--input_layers | string required multiple | Layers to import from TileDB-SOMA database. |
MuData output
Name | Type & Properties | Description |
|---|---|---|
--output | file required output | The output MuData file. |
--output_modality | string required | Name of the modality to write the results to. |
--output_compression | string | Compression format to use for the output AnnData and/or Mudata objects. By default no compression is applied. |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
s3_no_sign_request: [ false ]
output: "$id.$key.output.h5mu"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/openpipeline.git \
-revision v4.0.0 \
-main-script target/nextflow/convert/from_tiledb_to_h5mu/main.nf \
-params-file params.yaml Relationships
Used by
2 relationships
Current component
convert/from_tiledb_to_h5muopenpipeline v4.0.0
Uses
0 relationships
No component dependencies found.