metadata/move_obsm_to_obs
Description
Move a matrix from .obsm to .obs. Newly created columns in .obs will
be created from the .obsm key suffixed with an underscore and the name of the columns
of the specified .obsm matrix.
MuData Input
Name | Type & Properties | Description |
|---|---|---|
--input -i | file required | Input h5mu file |
--modality | string | Which modality from the input MuData file to process. |
--obsm_key | string required | Key of a data structure to move from `.obsm` to `.obs`. |
MuData Output
Name | Type & Properties | Description |
|---|---|---|
--output -o | file required output | Output h5mu file. |
--output_compression | string | Compression format to use for the output AnnData and/or Mudata objects. By default no compression is applied. |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
modality: [ "rna" ]
output: "$id.$key.output.h5mu"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/openpipeline.git \
-revision v4.0.0 \
-main-script target/nextflow/metadata/move_obsm_to_obs/main.nf \
-params-file params.yaml Relationships
Used by
2 relationships
Current component
metadata/move_obsm_to_obsopenpipeline v4.0.0
Uses
0 relationships
No component dependencies found.