transform/delete_layer
Description
Delete an anndata layer from one or more modalities.
Arguments
Name | Type & Properties | Description |
|---|---|---|
--input -i | file required | Input h5mu file |
--modality | string | Which modality from the input MuData file to process. |
--layer | string required multiple | Input layer to remove |
--output -o | file required output | Output h5mu file. |
--missing_ok | boolean_true | Do not raise an error if the layer does not exist for all modalities. |
--output_compression | string | Compression format to use for the output AnnData and/or Mudata objects. By default no compression is applied. |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
modality: [ "rna" ]
output: "$id.$key.output"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/openpipeline.git \
-revision v4.0.0 \
-main-script target/nextflow/transform/delete_layer/main.nf \
-params-file params.yaml Relationships
Used by
3 relationships
Current component
transform/delete_layeropenpipeline v4.0.0
Uses
0 relationships
No component dependencies found.