workflows/multiomics/split_modalities
Description
A pipeline to split a multimodal mudata files into several unimodal mudata files.
Inputs
Name | Type & Properties | Description |
|---|---|---|
--id | string required | ID of the sample. |
--input -i | file required | Path to the sample. |
Outputs
Name | Type & Properties | Description |
|---|---|---|
--output -o | file required output | Output directory containing multiple h5mu files. |
--output_types | file required output | A csv containing the base filename and modality type per output file. |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
id: "run"
output: "$id.$key.output./path/to/output"
output_types: "$id.$key.output_types.csv"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/openpipeline.git \
-revision v4.0.0 \
-main-script target/nextflow/workflows/multiomics/split_modalities/main.nf \
-params-file params.yaml Relationships
Used by
4 relationships
Current component
workflows/multiomics/split_modalitiesopenpipeline v4.0.0
Uses
1 relationships