convert/from_bdrhap_to_h5mu
Description
Convert the output of a BD Rhapsody pipeline v2.x to a MuData h5 file.
Arguments
Name | Type & Properties | Description |
|---|---|---|
--output_compression | string | Compression format to use for the output AnnData and/or Mudata H5 files. By default no compression is applied. |
Inputs
Name | Type & Properties | Description |
|---|---|---|
--id | string required | A sample ID. |
--input -i | file required | The output h5mu of a BD Rhapsody workflow. |
Outputs
Name | Type & Properties | Description |
|---|---|---|
--output -o | file required output | Output h5mu file. |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
id: "run"
output: "$id.$key.output.h5mu"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/openpipeline.git \
-revision v4.2.0 \
-main-script target/nextflow/convert/from_bdrhap_to_h5mu/main.nf \
-params-file params.yaml Relationships
Used by
1 relationships
Current component
convert/from_bdrhap_to_h5muopenpipeline v4.2.0
Uses
0 relationships
No component dependencies found.