qc/multiqc
Description
MultiQC aggregates results from bioinformatics analyses across many samples into a single report.
It searches a given directory for analysis logs and compiles a HTML report. It's a general use tool, perfect for summarising the output from numerous bioinformatics tools.
Arguments
Name | Type & Properties | Description |
|---|---|---|
--input -i | file required multiple | Inputs for MultiQC. |
--output -o | file required output | Create report in the specified output directory. |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
output: "$id.$key.output.path/to/report"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/openpipeline.git \
-revision v4.2.0 \
-main-script target/nextflow/qc/multiqc/main.nf \
-params-file params.yaml Relationships
Used by
1 relationships
Current component
qc/multiqcopenpipeline v4.2.0
Uses
0 relationships
No component dependencies found.