openpipeline_spatial

v0.6.0

Overview

Components (26)

Releases (7)

spaceranger_count

Count gene expression and protein expression reads from a single capture area using Space Ranger 4.1.0.

Bash

spaceranger

spaceranger_hd_mapping

Take raw Visium HD FASTQ files and produce a SpatialData object with the
segmented cells.

Nextflow

spaceranger_mapping

A pipeline for running Space Ranger (4.1.0) mapping.

Nextflow

Collaborate Accelerate Succeed

Empower your organization with secure, scalable workflow solutions that simplify development, ensure compliance, and drive innovation.

Viash Hub is a platform developed by Data Intuitive, a Belgian-based bioinformatics company specializing in data workflow development and deployment.

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