Description
Creates an HTML file with links to an instance of the UCSC Genome Browser for all features / intervals in a file.
This is useful for cases when one wants to manually inspect through a large set of annotations or features.
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
output: "$id.$key.output"
base_url: [ "http://genome.ucsc.edu" ]
organism: [ "human" ]
database: [ "hg18" ]
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/biobox.git \
-revision v0.3.1 \
-main-script target/nextflow/bedtools/bedtools_links/main.nf \
-params-file params.yaml Name | Type & Properties |
|---|---|
--input -i | file required |
Name | Type & Properties |
|---|---|
--output -o | file output |
Name | Type & Properties |
|---|---|
--base_url -base | string |
--organism -org | string |
--database -db | string |