busco/busco_download_datasets

lineage datasets

Description

Downloads available busco datasets

Type

bash_script

License

MIT

Keywords

lineage datasets

Links

Repository

Documentation

Contributors

Launch

Run this component

Run the following command to execute this component with Nextflow:

cat > params.yaml <<'EOM'  
download_path: "$id.$key.download_path.busco_downloads"  
id: "run"  
publish_dir: "output/"  
EOM

nextflow run https://packages.viash-hub.com/vsh/biobox.git \  
  -revision v0.4.0 \  
  -main-script target/nextflow/busco/busco_download_datasets/main.nf \  
  -params-file params.yaml

Inputs

Name	Type & Properties	Description
--download	string required	Download dataset. Possible values are a specific dataset name, "all", "prokaryota", "eukaryota", or "virus". The full list of available datasets can be viewed [here](https://busco-data.ezlab.org/v5/data/lineages/) or by running the busco/busco_list_datasets component.

Name

Type & Properties

--download

string

required

Outputs

Name	Type & Properties	Description
--download_path	file output	Local filepath for storing BUSCO dataset downloads

Name

Type & Properties

--download_path

file

output