bwa_mem2/bwa_mem2_index
alignment
indexing
BWA
BWA-MEM
BWA-MEM2
reference
Description
Index sequences in the FASTA format for BWA alignment.
Input
Name | Type & Properties | Description |
|---|---|---|
--input | file required | Input FASTA file to be indexed. |
Output
Name | Type & Properties | Description |
|---|---|---|
--output | file output | Output directory containing BWA index files (.0123, .amb, .ann, .bwt.2bit.64, .pac). |
Options
Name | Type & Properties | Description |
|---|---|---|
--prefix -p | string | Prefix of the index files. Default is same as input fasta name. |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
output: "$id.$key.output.bwa_index"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/biobox.git \
-revision v0.5.0 \
-main-script target/nextflow/bwa_mem2/bwa_mem2_index/main.nf \
-params-file params.yaml Relationships
Used by
0 relationships
No components use this component.
Current component
bwa_mem2/bwa_mem2_indexbiobox v0.5.0
Uses
0 relationships
No component dependencies found.