Description
Provides fasta index required by minimap2 alignment.
Create a minimap2 index (.mmi) from a FASTA reference.
This component uses minimap2's -d flag to create an index file (.mmi).
Type
bash_script
License
MIT
Keywords
Contributors
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
output: "$id.$key.output.mmi"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/biobox.git \
-revision v0.5.0 \
-main-script target/nextflow/minimap2/minimap2_index/main.nf \
-params-file params.yaml Name | Type & Properties |
|---|---|
--input -i | file required |
Name | Type & Properties |
|---|---|
--output -o | file required output |