Description
Copy the contents of a directory to an output directory.
Meant to be combined with a publishDir directive at the call site: the
run-specific part of the destination travels through --output (which the
caller builds from the state), while the publish root is supplied by the
publishDir directive. A publishDir directive cannot read per-sample state,
so anything state-dependent has to arrive as a regular argument.
Type
bash_script
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
output: "$id.$key.output.kallisto_quant"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/bulk-rnaseq.git \
-revision v0.2.0 \
-main-script target/nextflow/io/publish/main.nf \
-params-file params.yaml Name | Type & Properties |
|---|---|
--input | file required |
Name | Type & Properties |
|---|---|
--output | file required output |