Description
Concatenate a number of text files, handle gzipped text files gracefully and
optionally gzip the output text file.
This component is useful for concatening fastq files from different lanes, for instance.
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
output: "$id.$key.output.txt"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/craftbox.git \
-revision v0.3.3 \
-main-script target/nextflow/concat_text/main.nf \
-params-file params.yaml Name | Type & Properties |
|---|---|
--input | file required multiple |
Name | Type & Properties |
|---|---|
--gzip_output | boolean_true |
--output | file output |