workflows/utils/groupWells

Description

N/A

Type

nextflow_script

License

MIT

Links

Repository

Contributors

Launch

Run this component

Run the following command to execute this component with Nextflow:

cat > params.yaml <<'EOM'  
wells: "$id.$key.wells._*.gz"  
output_r1: "$id.$key.output_r1._*"  
output_r2: "$id.$key.output_r2._*"  
id: "run"  
publish_dir: "output/"  
EOM

nextflow run https://packages.viash-hub.com/vsh/htrnaseq.git \  
  -revision v0.1.0 \  
  -main-script target/nextflow/workflows/utils/groupWells/main.nf \  
  -params-file params.yaml

Inputs

Name	Type & Properties	Description
--well	string required	Barcode identifier for a well
--pool	string required	Identifier of the pool
--input_r1	file required	Path to the input for R1
--input_r2	file required	Path to the input for R1

Name

Type & Properties

--well

string

required

--pool

string

required

--input_r1

file

required

--input_r2

file

required

Output

Name	Type & Properties	Description
--wells	string multiple output	List of grouped wells (by means of barcodes)
--output_r1	file multiple output	Path to output for R2
--output_r2	file multiple output	Path to the output for R2

Name

Type & Properties

--wells

string

multiple

output

--output_r1

file

multiple

output

--output_r2

file

multiple

output