eset/create_fdata

Description

Create a fdata file

Type

python_script

License

MIT

Links

Repository

Contributors

Launch

Run this component

Run the following command to execute this component with Nextflow:

cat > params.yaml <<'EOM'  
output: "$id.$key.output"  
id: "run"  
publish_dir: "output/"  
EOM

nextflow run https://packages.viash-hub.com/vsh/htrnaseq.git \  
  -revision v0.15.0-rc.2 \  
  -main-script target/nextflow/eset/create_fdata/main.nf \  
  -params-file params.yaml

Arguments

Name	Type & Properties	Description
--gtf	file required	Genome annotation file in GTF format.
--output	file output	Tab-delimited text file containing information about the 'gene' or 'transcript' entries from the input GTF file. The 'transcript' entries are used in case the source of the GTF was 'refGene' or 'ncbiRefSeq'.

Name

Type & Properties

--gtf

file

required

--output

file

output